PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g007660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 170aa    MW: 19393.3 Da    PI: 9.6847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g007660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05830223
                    EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                    +C+ C+++F  + +L+ Hi   H
  Csa17g007660.1  8 ECGVCKRVFIAPQHLMAHIEAfH 30
                    6*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.538735IPR007087Zinc finger, C2H2
PROSITE patternPS000280930IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MPYSKPQECG VCKRVFIAPQ HLMAHIEAFH SSRHFPTFAS PAAASPASTF HHFPNQLMNR  60
NRNPNPPTFQ ARTHLDYYRR GYLDDQGNFH KGFPPAPAMT PERKYKFLLP KPKISKTAPK  120
LMDLFPEETS LECIRTLPLI CQLERRRPEE TVTENGGVNS SYIDLSLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475102.11e-124PREDICTED: uncharacterized protein LOC104754581
TrEMBLR0GLU41e-73R0GLU4_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.1__377__AT1G04445.15e-59(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04445.11e-55C2H2-like zinc finger protein